J4_5AJ3_001

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGCCCCGG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

5AJ3|1|A|C|171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ3|1|A|C|52
5AJ3|1|A|A|53
5AJ3|1|A|A|54
5AJ3|1|A|G|55
*
5AJ3|1|A|C|62
5AJ3|1|A|G|63
5AJ3|1|A|C|64
5AJ3|1|A|C|65
5AJ3|1|A|C|66
5AJ3|1|A|C|67
5AJ3|1|A|G|68
5AJ3|1|A|G|69
*
5AJ3|1|A|C|156
5AJ3|1|A|A|157
5AJ3|1|A|C|158
*
5AJ3|1|A|G|167
5AJ3|1|A|A|168
5AJ3|1|A|A|169
5AJ3|1|A|A|170
5AJ3|1|A|C|171
5AJ3|1|A|A|172
5AJ3|1|A|G|173

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain P

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain d

MITORIBOSOMAL PROTEIN MS26, MRPS26

Chain j

MITORIBOSOMAL PROTEIN MS34, MRPS34