J4_5AJ3_003
3D structure
- PDB id
- 5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the small subunit of the mammalian mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAG*CGAUAG*CCCUAAACCCAA*UC
- Length
- 23 nucleotides
- Bulged bases
- 5AJ3|1|A|A|297, 5AJ3|1|A|A|455, 5AJ3|1|A|C|458, 5AJ3|1|A|A|460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ3_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1711
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AJ3|1|A|G|296
5AJ3|1|A|A|297
5AJ3|1|A|G|298
*
5AJ3|1|A|C|404
5AJ3|1|A|G|405
5AJ3|1|A|A|406
5AJ3|1|A|U|407
5AJ3|1|A|A|408
5AJ3|1|A|G|409
*
5AJ3|1|A|C|450
5AJ3|1|A|C|451
5AJ3|1|A|C|452
5AJ3|1|A|U|453
5AJ3|1|A|A|454
5AJ3|1|A|A|455
5AJ3|1|A|A|456
5AJ3|1|A|C|457
5AJ3|1|A|C|458
5AJ3|1|A|C|459
5AJ3|1|A|A|460
5AJ3|1|A|A|461
*
5AJ3|1|A|U|483
5AJ3|1|A|C|484
Current chains
- Chain A
- MITORIBOSOMAL 12S RRNA
Nearby chains
- Chain L
- MITORIBOSOMAL PROTEIN US12M, MRPS12
- Chain O
- MITORIBOSOMAL PROTEIN US15M, MRPS15
- Chain Q
- MITORIBOSOMAL PROTEIN US17M, MRPS17
- Chain U
- MITORIBOSOMAL PROTEIN BS21M, MRPS21
- Chain c
- MITORIBOSOMAL PROTEIN MS25, MRPS25
- Chain m
- MITORIBOSOMAL PROTEIN MS37, MRPS37
- Chain n
- MITORIBOSOMAL PROTEIN MS38, MRPS38
Coloring options: