J4_5AJ4_001

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CGCCCCGG*CAC*GAAACAG

Length

22 nucleotides

Bulged bases

5AJ4|1|AA|A|54, 5AJ4|1|AA|C|171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|AA|C|52
5AJ4|1|AA|A|53
5AJ4|1|AA|A|54
5AJ4|1|AA|G|55
*
5AJ4|1|AA|C|62
5AJ4|1|AA|G|63
5AJ4|1|AA|C|64
5AJ4|1|AA|C|65
5AJ4|1|AA|C|66
5AJ4|1|AA|C|67
5AJ4|1|AA|G|68
5AJ4|1|AA|G|69
*
5AJ4|1|AA|C|156
5AJ4|1|AA|A|157
5AJ4|1|AA|C|158
*
5AJ4|1|AA|G|167
5AJ4|1|AA|A|168
5AJ4|1|AA|A|169
5AJ4|1|AA|A|170
5AJ4|1|AA|C|171
5AJ4|1|AA|A|172
5AJ4|1|AA|G|173

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AP

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain Ad

MITORIBOSOMAL PROTEIN MS26, MRPS26

Chain Aj

MITORIBOSOMAL PROTEIN MS34, MRPS34

Chain BO

MITORIBOSOMAL PROTEIN UL14M, MRPL14