J4_5AJ4_003

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CGAUAG*CCCUAAACCCAA*UC

Length

23 nucleotides

Bulged bases

5AJ4|1|AA|A|297, 5AJ4|1|AA|A|455, 5AJ4|1|AA|C|458, 5AJ4|1|AA|A|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5AJ4_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.1818

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

5AJ4|1|AA|G|296
5AJ4|1|AA|A|297
5AJ4|1|AA|G|298
*
5AJ4|1|AA|C|404
5AJ4|1|AA|G|405
5AJ4|1|AA|A|406
5AJ4|1|AA|U|407
5AJ4|1|AA|A|408
5AJ4|1|AA|G|409
*
5AJ4|1|AA|C|450
5AJ4|1|AA|C|451
5AJ4|1|AA|C|452
5AJ4|1|AA|U|453
5AJ4|1|AA|A|454
5AJ4|1|AA|A|455
5AJ4|1|AA|A|456
5AJ4|1|AA|C|457
5AJ4|1|AA|C|458
5AJ4|1|AA|C|459
5AJ4|1|AA|A|460
5AJ4|1|AA|A|461
*
5AJ4|1|AA|U|483
5AJ4|1|AA|C|484

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AL

MITORIBOSOMAL PROTEIN US12M, MRPS12

Chain AO

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain AQ

MITORIBOSOMAL PROTEIN US17M, MRPS17

Chain AU

MITORIBOSOMAL PROTEIN BS21M, MRPS21

Chain Ac

MITORIBOSOMAL PROTEIN MS25, MRPS25

Chain Am

MITORIBOSOMAL PROTEIN MS37, MRPS37

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38