J4_5AJ4_004

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CU*AAAG*CAG

Length

13 nucleotides

Bulged bases

5AJ4|1|BA|A|648, 5AJ4|1|BA|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|C|646
5AJ4|1|BA|A|647
5AJ4|1|BA|A|648
5AJ4|1|BA|G|649
*
5AJ4|1|BA|C|658
5AJ4|1|BA|U|659
*
5AJ4|1|BA|A|779
5AJ4|1|BA|A|780
5AJ4|1|BA|A|781
5AJ4|1|BA|G|782
*
5AJ4|1|BA|C|1001
5AJ4|1|BA|A|1002
5AJ4|1|BA|G|1003

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B5

MITORIBOSOMAL PROTEIN BL32M, MRPL32

Chain BR

MITORIBOSOMAL PROTEIN BL17M, MRPL17

Chain BW

MITORIBOSOMAL PROTEIN UL22M, MRPL22

Chain Bw

MITORIBOSOMAL PROTEIN ML65, MRPS30