J4_5AJ4_006

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUG*CAUCAC*GCAAUG*CCACAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|G|822
5AJ4|1|BA|C|823
5AJ4|1|BA|C|824
5AJ4|1|BA|U|825
5AJ4|1|BA|G|826
*
5AJ4|1|BA|C|838
5AJ4|1|BA|A|839
5AJ4|1|BA|U|840
5AJ4|1|BA|C|841
5AJ4|1|BA|A|842
5AJ4|1|BA|C|843
*
5AJ4|1|BA|G|867
5AJ4|1|BA|C|868
5AJ4|1|BA|A|869
5AJ4|1|BA|A|870
5AJ4|1|BA|U|871
5AJ4|1|BA|G|872
*
5AJ4|1|BA|C|967
5AJ4|1|BA|C|968
5AJ4|1|BA|A|969
5AJ4|1|BA|C|970
5AJ4|1|BA|A|971
5AJ4|1|BA|C|972

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2