J4_5AJ4_007
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUG*CC*GCAAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5AJ4|1|BA|U|964
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5AJ4_007 not in the Motif Atlas
- Homologous match to J4_5J7L_026
- Geometric discrepancy: 0.1433
- The information below is about J4_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AJ4|1|BA|C|874
5AJ4|1|BA|U|875
5AJ4|1|BA|G|876
*
5AJ4|1|BA|C|899
5AJ4|1|BA|C|900
*
5AJ4|1|BA|G|917
5AJ4|1|BA|C|918
5AJ4|1|BA|A|919
5AJ4|1|BA|A|920
5AJ4|1|BA|A|921
5AJ4|1|BA|G|922
5AJ4|1|BA|G|923
5AJ4|1|BA|U|924
5AJ4|1|BA|A|925
5AJ4|1|BA|G|926
*
5AJ4|1|BA|U|960
5AJ4|1|BA|G|961
5AJ4|1|BA|A|962
5AJ4|1|BA|A|963
5AJ4|1|BA|U|964
5AJ4|1|BA|G|965
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- P-SITE AND A-SITE TRNA
- Chain An
- MITORIBOSOMAL PROTEIN MS38, MRPS38
- Chain BD
- MITORIBOSOMAL PROTEIN UL2M, MRPL2
Coloring options: