J4_5AJ4_010

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

(P5P)(Y5P)(P5P)(P5P)*(Y5P)(P5P)(P5P)*(Y5P)(P5P)(P5P)(P5P)(Y5P)(P5P)*(Y5P)(Y5P)

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: P5P, Y5P

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BB|P5P|7
5AJ4|1|BB|Y5P|8
5AJ4|1|BB|P5P|9
5AJ4|1|BB|P5P|10
*
5AJ4|1|BB|Y5P|26
5AJ4|1|BB|P5P|27
5AJ4|1|BB|P5P|28
*
5AJ4|1|BB|Y5P|44
5AJ4|1|BB|P5P|45
5AJ4|1|BB|P5P|46
5AJ4|1|BB|P5P|47
5AJ4|1|BB|Y5P|48
5AJ4|1|BB|P5P|49
*
5AJ4|1|BB|Y5P|62
5AJ4|1|BB|Y5P|63

Current chains

Chain BB

MITORIBOSOMAL CP TRNA

Nearby chains

Chain B0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain BS

MITORIBOSOMAL PROTEIN UL18M, MRPL18

Chain Bb

MITORIBOSOMAL PROTEIN ML38, MRPL38

Chain Bd

MITORIBOSOMAL PROTEIN ML40, MRPL40

Chain Bk

MITORIBOSOMAL PROTEIN ML48, MRPL48