J4_5APO_003
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 5APO|1|5|A|1452||||P_1, 5APO|1|5|U|1455||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5APO_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.1344
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5APO|1|5|C|1451||||P_1
5APO|1|5|A|1452||||P_1
5APO|1|5|A|1453||||P_1
5APO|1|5|A|1454||||P_1
5APO|1|5|U|1455||||P_1
5APO|1|5|A|1456||||P_1
5APO|1|5|U|1457||||P_1
*
5APO|1|5|A|1475||||P_1
5APO|1|5|G|1476||||P_1
*
5APO|1|5|U|1877||||P_1
5APO|1|5|G|1878||||P_1
5APO|1|5|A|1879||||P_1
5APO|1|5|U|1880||||P_1
*
5APO|1|5|A|2352||||P_1
5APO|1|5|G|2353||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain P
- 60S ribosomal protein L17-A
- Chain R
- 60S ribosomal protein L19-A
- Chain d
- 60S ribosomal protein L31-A
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