J4_5APO_004
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5APO|1|5|U|1523||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APO|1|5|G|1492||||P_1
5APO|1|5|G|1493||||P_1
5APO|1|5|U|1494||||P_1
5APO|1|5|U|1495||||P_1
5APO|1|5|C|1496||||P_1
*
5APO|1|5|G|1520||||P_1
5APO|1|5|G|1521||||P_1
5APO|1|5|U|1522||||P_1
5APO|1|5|U|1523||||P_1
5APO|1|5|A|1524||||P_1
5APO|1|5|G|1525||||P_1
*
5APO|1|5|C|1614||||P_1
5APO|1|5|C|1615||||P_1
*
5APO|1|5|G|1829||||P_1
5APO|1|5|G|1830||||P_1
5APO|1|5|U|1831||||P_1
5APO|1|5|C|1832||||P_1
5APO|1|5|G|1833||||P_1
5APO|1|5|U|1834||||P_1
5APO|1|5|A|1835||||P_1
5APO|1|5|C|1836||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- 60S ribosomal protein L19-A
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
- Chain j
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
- Chain x
- Probable metalloprotease ARX1
Coloring options: