J4_5APO_008

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUGG

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5APO_008 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.5423

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5APO|1|5|C|2192||||P_1
5APO|1|5|U|2193||||P_1
5APO|1|5|G|2194||||P_1
*
5APO|1|5|C|2248||||P_1
5APO|1|5|G|2249||||P_1
*
5APO|1|5|C|2267||||P_1
5APO|1|5|U|2268||||P_1
5APO|1|5|U|2269||||P_1
5APO|1|5|A|2270||||P_1
5APO|1|5|A|2271||||P_1
5APO|1|5|G|2272||||P_1
5APO|1|5|G|2273||||P_1
5APO|1|5|U|2274||||P_1
5APO|1|5|A|2275||||P_1
5APO|1|5|G|2276||||P_1
*
5APO|1|5|U|2310||||P_1
5APO|1|5|G|2311||||P_1
5APO|1|5|A|2312||||P_1
5APO|1|5|A|2313||||P_1
5APO|1|5|U|2314||||P_1
5APO|1|5|G|2315||||P_1
5APO|1|5|G|2316||||P_1

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A