J4_5C45_001

3D structure

PDB id

5C45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Selective Small Molecule Inhibition of the FMN Riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

2.93 Å

Loop

Sequence

CGGGGCAG*CGACC*GAC*GGAUGAGAG

Length

25 nucleotides

Bulged bases

5C45|1|Y|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5C45|1|X|C|8
5C45|1|X|G|9
5C45|1|X|G|10
5C45|1|X|G|11
5C45|1|X|G|12
5C45|1|X|C|13
5C45|1|X|A|14
5C45|1|X|G|15
*
5C45|1|X|C|27
5C45|1|X|G|28
5C45|1|X|A|29
5C45|1|X|C|30
5C45|1|X|C|31
*
5C45|1|Y|G|84
5C45|1|Y|A|85
5C45|1|Y|C|86
*
5C45|1|Y|G|97
5C45|1|Y|G|98
5C45|1|Y|A|99
5C45|1|Y|U|100
5C45|1|Y|G|101
5C45|1|Y|A|102
5C45|1|Y|G|103
5C45|1|Y|A|104
5C45|1|Y|G|105

Current chains

Chain X

FMN Riboswitch

Chain Y

FMN Riboswitch

Nearby chains