3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
5DAT|1|5|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DAT|1|5|G|1492
5DAT|1|5|G|1493
5DAT|1|5|U|1494
5DAT|1|5|U|1495
5DAT|1|5|C|1496
*
5DAT|1|5|G|1520
5DAT|1|5|G|1521
5DAT|1|5|U|1522
5DAT|1|5|U|1523
5DAT|1|5|A|1524
5DAT|1|5|G|1525
*
5DAT|1|5|C|1614
5DAT|1|5|C|1615
*
5DAT|1|5|G|1829
5DAT|1|5|G|1830
5DAT|1|5|U|1831
5DAT|1|5|C|1832
5DAT|1|5|G|1833
5DAT|1|5|U|1834
5DAT|1|5|A|1835
5DAT|1|5|C|1836

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain m9
60S ribosomal protein L19-A
Chain n5
60S ribosomal protein L25
Chain o4
60S ribosomal protein L34-A (eL34)
Chain o7
60S ribosomal protein L37-A
Chain o8
60S ribosomal protein L38
Chain o9
60S ribosomal protein L39

Coloring options:

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