J4_5DC3_019
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5DC3_019 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1539
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
5DC3|1|5|C|2192
5DC3|1|5|U|2193
5DC3|1|5|G|2194
*
5DC3|1|5|C|2248
5DC3|1|5|G|2249
*
5DC3|1|5|C|2267
5DC3|1|5|U|2268
5DC3|1|5|U|2269
5DC3|1|5|A|2270
5DC3|1|5|A|2271
5DC3|1|5|G|2272
5DC3|1|5|G|2273
5DC3|1|5|U|2274
5DC3|1|5|A|2275
5DC3|1|5|G|2276
*
5DC3|1|5|U|2310
5DC3|1|5|G|2311
5DC3|1|5|A|2312
5DC3|1|5|A|2313
5DC3|1|5|U|2314
5DC3|1|5|G|2315
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 6
- Small subunit ribosomal RNA; SSU rRNA
- Chain f
- Eukaryotic translation initiation factor 5A-1
- Chain l2
- 60S ribosomal protein L2-A
- Chain q1
- 60S ribosomal protein L41-A
Coloring options: