J4_5DFE_011

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DFE_011 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0508

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5DFE|1|RA|G|1772
5DFE|1|RA|A|1773
5DFE|1|RA|C|1774
5DFE|1|RA|U|1775
5DFE|1|RA|G|1776
*
5DFE|1|RA|C|1788
5DFE|1|RA|A|1789
5DFE|1|RA|C|1790
5DFE|1|RA|A|1791
5DFE|1|RA|G|1792
*
5DFE|1|RA|C|1827
5DFE|1|RA|G|1828
5DFE|1|RA|A|1829
5DFE|1|RA|C|1830
*
5DFE|1|RA|G|1975
5DFE|1|RA|U|1976
5DFE|1|RA|A|1977
5DFE|1|RA|A|1978
5DFE|1|RA|C|1979

Current chains

Chain RA

T23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2