3D structure

PDB id
5DOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AAGAG*CAUGUG*CAAAG*CGCUU
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DOX|1|1a|A|140
5DOX|1|1a|A|141
5DOX|1|1a|G|142
5DOX|1|1a|A|143
5DOX|1|1a|G|144
*
5DOX|1|1a|C|178
5DOX|1|1a|A|179
5DOX|1|1a|U|180
5DOX|1|1a|G|181
5DOX|1|1a|U|182
5DOX|1|1a|G|183
*
5DOX|1|1a|C|194
5DOX|1|1a|A|195
5DOX|1|1a|A|196
5DOX|1|1a|A|197
5DOX|1|1a|G|198
*
5DOX|1|1a|C|219
5DOX|1|1a|G|220
5DOX|1|1a|C|221
5DOX|1|1a|U|222
5DOX|1|1a|U|223

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1t
30S ribosomal protein S20

Coloring options:

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