J4_5DOY_008
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUG*CG*CCUAAGGUAG*CGAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5DOY|1|1A|A|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5DOY_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0567
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
5DOY|1|1A|U|1833
5DOY|1|1A|U|1834
5DOY|1|1A|G|1835
*
5DOY|1|1A|C|1905
5DOY|1|1A|G|1906
*
5DOY|1|1A|C|1924
5DOY|1|1A|C|1925
5DOY|1|1A|U|1926
5DOY|1|1A|A|1927
5DOY|1|1A|A|1928
5DOY|1|1A|G|1929
5DOY|1|1A|G|1930
5DOY|1|1A|U|1931
5DOY|1|1A|A|1932
5DOY|1|1A|G|1933
*
5DOY|1|1A|C|1967
5DOY|1|1A|G|1968
5DOY|1|1A|A|1969
5DOY|1|1A|A|1970
5DOY|1|1A|A|1971
5DOY|1|1A|A|1972
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S Ribosomal Protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
Coloring options: