J4_5DOY_012
3D structure
- PDB id
- 5DOY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAGG*CCGC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5DOY|1|1a|G|142
5DOY|1|1a|A|143
5DOY|1|1a|G|144
*
5DOY|1|1a|C|178
5DOY|1|1a|A|179
5DOY|1|1a|U|180
5DOY|1|1a|G|181
5DOY|1|1a|U|182
5DOY|1|1a|G|183
*
5DOY|1|1a|C|194
5DOY|1|1a|A|195
5DOY|1|1a|A|196
5DOY|1|1a|A|197
5DOY|1|1a|G|198
5DOY|1|1a|G|199
*
5DOY|1|1a|C|218
5DOY|1|1a|C|219
5DOY|1|1a|G|220
5DOY|1|1a|C|221
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1t
- 30S Ribosomal Protein S20
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