J4_5E7K_003

3D structure

PDB id

5E7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCGC

Length

32 nucleotides

Bulged bases

5E7K|1|13|A|572, 5E7K|1|13|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5E7K|1|13|G|568
5E7K|1|13|C|569
5E7K|1|13|G|570
5E7K|1|13|U|571
5E7K|1|13|A|572
5E7K|1|13|A|573
5E7K|1|13|A|574
5E7K|1|13|G|575
5E7K|1|13|G|576
5E7K|1|13|G|577
*
5E7K|1|13|C|764
5E7K|1|13|G|765
5E7K|1|13|A|766
5E7K|1|13|A|767
5E7K|1|13|A|768
5E7K|1|13|G|769
*
5E7K|1|13|C|810
5E7K|1|13|C|811
5E7K|1|13|C|812
5E7K|1|13|U|813
5E7K|1|13|A|814
5E7K|1|13|A|815
5E7K|1|13|A|816
5E7K|1|13|C|817
5E7K|1|13|G|818
5E7K|1|13|A|819
5E7K|1|13|U|820
5E7K|1|13|G|821
*
5E7K|1|13|C|879
5E7K|1|13|C|880
5E7K|1|13|G|881
5E7K|1|13|C|882

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 3I

30S ribosomal protein S12

Chain 4E

30S ribosomal protein S5

Chain 6I

30S ribosomal protein S15

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17