3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
5E7K|1|14|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5E7K_011 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0879
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5E7K|1|14|U|1833
5E7K|1|14|U|1834
5E7K|1|14|G|1835
*
5E7K|1|14|C|1905
5E7K|1|14|G|1906
*
5E7K|1|14|C|1924
5E7K|1|14|C|1925
5E7K|1|14|U|1926
5E7K|1|14|A|1927
5E7K|1|14|A|1928
5E7K|1|14|G|1929
5E7K|1|14|G|1930
5E7K|1|14|U|1931
5E7K|1|14|A|1932
5E7K|1|14|G|1933
*
5E7K|1|14|C|1967
5E7K|1|14|G|1968
5E7K|1|14|A|1969
5E7K|1|14|A|1970
5E7K|1|14|A|1971
5E7K|1|14|A|1972

Current chains

Chain 14
23S rRNA

Nearby chains

Chain 19
50S ribosomal protein L2
Chain 1G
Small subunit ribosomal RNA; SSU rRNA
Chain 2L
Transfer RNA; tRNA

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