J4_5EL5_011

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

5EL5|1|14|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL5_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0919

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5EL5|1|14|U|1833
5EL5|1|14|U|1834
5EL5|1|14|G|1835
*
5EL5|1|14|C|1905
5EL5|1|14|G|1906
*
5EL5|1|14|C|1924
5EL5|1|14|C|1925
5EL5|1|14|U|1926
5EL5|1|14|A|1927
5EL5|1|14|A|1928
5EL5|1|14|G|1929
5EL5|1|14|G|1930
5EL5|1|14|U|1931
5EL5|1|14|A|1932
5EL5|1|14|G|1933
*
5EL5|1|14|C|1967
5EL5|1|14|G|1968
5EL5|1|14|A|1969
5EL5|1|14|A|1970
5EL5|1|14|A|1971
5EL5|1|14|A|1972

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 2L

Transfer RNA; tRNA