J4_5EL5_035
3D structure
- PDB id
- 5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUCGUUAG*CAG*UUGGUCGCAG*CUGCACGACC
- Length
- 32 nucleotides
- Bulged bases
- 5EL5|1|3K|U|8, 5EL5|1|3K|A|9, 5EL5|1|3K|G|45, 5EL5|1|3K|G|46, 5EL5|1|3K|U|47, 5EL5|1|3K|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5EL5|1|3K|G|2
5EL5|1|3K|G|3
5EL5|1|3K|U|4
5EL5|1|3K|C|5
5EL5|1|3K|G|6
5EL5|1|3K|U|7
5EL5|1|3K|U|8
5EL5|1|3K|A|9
5EL5|1|3K|G|10
*
5EL5|1|3K|C|25
5EL5|1|3K|A|26
5EL5|1|3K|G|27
*
5EL5|1|3K|U|43
5EL5|1|3K|U|44
5EL5|1|3K|G|45
5EL5|1|3K|G|46
5EL5|1|3K|U|47
5EL5|1|3K|C|48
5EL5|1|3K|G|49
5EL5|1|3K|C|50
5EL5|1|3K|A|51
5EL5|1|3K|G|52
*
5EL5|1|3K|C|62
5EL5|1|3K|U|63
5EL5|1|3K|G|64
5EL5|1|3K|C|65
5EL5|1|3K|A|66
5EL5|1|3K|C|67
5EL5|1|3K|G|68
5EL5|1|3K|A|69
5EL5|1|3K|C|70
5EL5|1|3K|C|71
Current chains
- Chain 3K
- tRNALys
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 6E
- 30S ribosomal protein S7
- Chain 71
- 50S ribosomal protein L1
- Chain J8
- 50S ribosomal protein L28
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