J4_5EL6_003
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 5EL6|1|13|A|572, 5EL6|1|13|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5EL6|1|13|C|569
5EL6|1|13|G|570
5EL6|1|13|U|571
5EL6|1|13|A|572
5EL6|1|13|A|573
5EL6|1|13|A|574
5EL6|1|13|G|575
5EL6|1|13|G|576
5EL6|1|13|G|577
*
5EL6|1|13|C|764
5EL6|1|13|G|765
5EL6|1|13|A|766
5EL6|1|13|A|767
5EL6|1|13|A|768
5EL6|1|13|G|769
*
5EL6|1|13|C|810
5EL6|1|13|C|811
5EL6|1|13|C|812
5EL6|1|13|U|813
5EL6|1|13|A|814
5EL6|1|13|A|815
5EL6|1|13|A|816
5EL6|1|13|C|817
5EL6|1|13|G|818
5EL6|1|13|A|819
5EL6|1|13|U|820
5EL6|1|13|G|821
*
5EL6|1|13|C|879
5EL6|1|13|C|880
5EL6|1|13|G|881
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain 4E
- 30S ribosomal protein S5
- Chain 6I
- 30S ribosomal protein S15
- Chain 7E
- 30S ribosomal protein S8
- Chain 8I
- 30S ribosomal protein S17
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