J4_5EL6_010

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL6_010 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0636

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5EL6|1|14|G|1772
5EL6|1|14|A|1773
5EL6|1|14|C|1774
5EL6|1|14|U|1775
5EL6|1|14|G|1776
*
5EL6|1|14|C|1788
5EL6|1|14|A|1789
5EL6|1|14|C|1790
5EL6|1|14|A|1791
5EL6|1|14|G|1792
*
5EL6|1|14|C|1827
5EL6|1|14|G|1828
5EL6|1|14|A|1829
5EL6|1|14|C|1830
*
5EL6|1|14|G|1975
5EL6|1|14|U|1976
5EL6|1|14|A|1977
5EL6|1|14|A|1978
5EL6|1|14|C|1979

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA