J4_5EL6_018

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL6_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0753

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5EL6|1|1H|C|297
5EL6|1|1H|G|298
5EL6|1|1H|A|299
5EL6|1|1H|A|300
5EL6|1|1H|G|301
*
5EL6|1|1H|C|316
5EL6|1|1H|G|317
5EL6|1|1H|C|318
5EL6|1|1H|C|319
*
5EL6|1|1H|G|323
5EL6|1|1H|A|324
5EL6|1|1H|G|325
*
5EL6|1|1H|C|337
5EL6|1|1H|G|338
5EL6|1|1H|U|339
5EL6|1|1H|A|340
5EL6|1|1H|G|341

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24