J4_5EL6_028
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAG(G7M)UCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5EL6|1|2L|4SU|8, 5EL6|1|2L|U|48, 5EL6|1|2L|C|49
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5EL6_028 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1976
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
5EL6|1|2L|G|7
5EL6|1|2L|4SU|8
5EL6|1|2L|G|9
5EL6|1|2L|G|10
*
5EL6|1|2L|C|26
5EL6|1|2L|G|27
5EL6|1|2L|U|28
*
5EL6|1|2L|A|44
5EL6|1|2L|A|45
5EL6|1|2L|G|46
5EL6|1|2L|G7M|47
5EL6|1|2L|U|48
5EL6|1|2L|C|49
5EL6|1|2L|G|50
*
5EL6|1|2L|C|66
5EL6|1|2L|C|67
Current chains
- Chain 2L
- E. coli tRNAfMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1L
- Transfer RNA; tRNA
- Chain 45
- 50S ribosomal protein L16
- Chain 4A
- 30S ribosomal protein S13
- Chain E5
- 50S ribosomal protein L27
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