J4_5EL6_030

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAG*CAGU*AUUGGUCG*CA

Length

18 nucleotides

Bulged bases

5EL6|1|3L|U|8, 5EL6|1|3L|U|47, 5EL6|1|3L|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL6_030 not in the Motif Atlas

Homologous match to J4_4RDX_001

Geometric discrepancy: 0.4642

The information below is about J4_4RDX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|3L|U|7
5EL6|1|3L|U|8
5EL6|1|3L|A|9
5EL6|1|3L|G|10
*
5EL6|1|3L|C|25
5EL6|1|3L|A|26
5EL6|1|3L|G|27
5EL6|1|3L|U|28
*
5EL6|1|3L|A|42
5EL6|1|3L|U|43
5EL6|1|3L|U|44
5EL6|1|3L|G|45
5EL6|1|3L|G|46
5EL6|1|3L|U|47
5EL6|1|3L|C|48
5EL6|1|3L|G|49
*
5EL6|1|3L|C|65
5EL6|1|3L|A|66

Current chains

Chain 3L

tRNALys

Nearby chains

Chain 2A

30S ribosomal protein S11

Chain 62

30S ribosomal protein S7