J4_5EL7_001

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAGUAACG*UCC*GGUAG*CC

Length

18 nucleotides

Bulged bases

5EL7|1|13|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|13|G|115
5EL7|1|13|A|116
5EL7|1|13|G|117
5EL7|1|13|U|118
5EL7|1|13|A|119
5EL7|1|13|A|120
5EL7|1|13|C|121
5EL7|1|13|G|122
*
5EL7|1|13|U|239
5EL7|1|13|C|240
5EL7|1|13|C|241
*
5EL7|1|13|G|285
5EL7|1|13|G|286
5EL7|1|13|U|287
5EL7|1|13|A|288
5EL7|1|13|G|289
*
5EL7|1|13|C|311
5EL7|1|13|C|312

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 7I

30S ribosomal protein S16

Chain 8I

30S ribosomal protein S17