J4_5EL7_002

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AGAG*CAUGUG*CAAAGG*CCGCU

Length

21 nucleotides

Bulged bases

5EL7|1|13|U|182, 5EL7|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|13|A|141
5EL7|1|13|G|142
5EL7|1|13|A|143
5EL7|1|13|G|144
*
5EL7|1|13|C|178
5EL7|1|13|A|179
5EL7|1|13|U|180
5EL7|1|13|G|181
5EL7|1|13|U|182
5EL7|1|13|G|183
*
5EL7|1|13|C|194
5EL7|1|13|A|195
5EL7|1|13|A|196
5EL7|1|13|A|197
5EL7|1|13|G|198
5EL7|1|13|G|199
*
5EL7|1|13|C|218
5EL7|1|13|C|219
5EL7|1|13|G|220
5EL7|1|13|C|221
5EL7|1|13|U|222

Current chains

Chain 13

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S20