J4_5EL7_005

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL7_005 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0937

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5EL7|1|14|C|297
5EL7|1|14|G|298
5EL7|1|14|A|299
5EL7|1|14|A|300
5EL7|1|14|G|301
*
5EL7|1|14|C|316
5EL7|1|14|G|317
5EL7|1|14|C|318
5EL7|1|14|C|319
*
5EL7|1|14|G|323
5EL7|1|14|A|324
5EL7|1|14|G|325
*
5EL7|1|14|C|337
5EL7|1|14|G|338
5EL7|1|14|U|339
5EL7|1|14|A|340
5EL7|1|14|G|341

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24