J4_5EL7_019

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

5EL7|1|1H|G|1271, 5EL7|1|1H|A|1272, 5EL7|1|1H|U|1273, 5EL7|1|1H|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL7_019 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0791

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5EL7|1|1H|C|1270
5EL7|1|1H|G|1271
5EL7|1|1H|A|1272
5EL7|1|1H|U|1273
5EL7|1|1H|A|1274
5EL7|1|1H|A|1275
5EL7|1|1H|A|1276
*
5EL7|1|1H|U|1294
5EL7|1|1H|C|1295
*
5EL7|1|1H|G|1645
5EL7|1|1H|C|1646
5EL7|1|1H|G|1647
5EL7|1|1H|C|1648
*
5EL7|1|1H|G|2009
5EL7|1|1H|G|2010

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 98

50S ribosomal protein L17

Chain E8

50S ribosomal protein L22

Chain N8

50S ribosomal protein L32