J4_5EL7_027
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAG(G7M)UCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5EL7|1|2K|4SU|8, 5EL7|1|2K|U|48, 5EL7|1|2K|C|49
- QA status
- Modified nucleotides: 4SU, G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5EL7_027 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.1235
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5EL7|1|2K|G|7
5EL7|1|2K|4SU|8
5EL7|1|2K|G|9
5EL7|1|2K|G|10
*
5EL7|1|2K|C|26
5EL7|1|2K|G|27
5EL7|1|2K|U|28
*
5EL7|1|2K|A|44
5EL7|1|2K|A|45
5EL7|1|2K|G|46
5EL7|1|2K|G7M|47
5EL7|1|2K|U|48
5EL7|1|2K|C|49
5EL7|1|2K|G|50
*
5EL7|1|2K|C|66
5EL7|1|2K|C|67
Current chains
- Chain 2K
- E. coli tRNAfMet
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1K
- Transfer RNA; tRNA
- Chain 4I
- 30S ribosomal protein S13
- Chain 88
- 50S ribosomal protein L16
- Chain I8
- 50S ribosomal protein L27
Coloring options: