J4_5F8K_007
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5F8K_007 not in the Motif Atlas
- Homologous match to J4_9DFE_007
- Geometric discrepancy: 0.0467
- The information below is about J4_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5F8K|1|1A|G|1803
5F8K|1|1A|A|1804
5F8K|1|1A|C|1805
5F8K|1|1A|U|1806
5F8K|1|1A|G|1807
*
5F8K|1|1A|C|1819
5F8K|1|1A|A|1820
5F8K|1|1A|C|1821
5F8K|1|1A|A|1822
5F8K|1|1A|G|1823
*
5F8K|1|1A|C|1858
5F8K|1|1A|G|1859
5F8K|1|1A|A|1860
5F8K|1|1A|C|1861
*
5F8K|1|1A|G|1997
5F8K|1|1A|U|1998
5F8K|1|1A|A|1999
5F8K|1|1A|A|2000
5F8K|1|1A|C|2001
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: