J4_5FDV_003
3D structure
- PDB id
- 5FDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 5FDV|1|1A|G|1317, 5FDV|1|1A|A|1318, 5FDV|1|1A|U|1319, 5FDV|1|1A|G|1694
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5FDV_003 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0444
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5FDV|1|1A|C|1316
5FDV|1|1A|G|1317
5FDV|1|1A|A|1318
5FDV|1|1A|U|1319
5FDV|1|1A|A|1320
5FDV|1|1A|A|1321
5FDV|1|1A|A|1322
*
5FDV|1|1A|U|1340
5FDV|1|1A|C|1341
*
5FDV|1|1A|G|1692
5FDV|1|1A|C|1693
5FDV|1|1A|G|1694
5FDV|1|1A|C|1695
*
5FDV|1|1A|G|2031
5FDV|1|1A|G|2032
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1R
- 50S ribosomal protein L17
- Chain 1W
- 50S ribosomal protein L22
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