J4_5GAD_005

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5GAD|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAD_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0686

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5GAD|1|A|G|1310
5GAD|1|A|G|1311
5GAD|1|A|U|1312
5GAD|1|A|U|1313
5GAD|1|A|C|1314
*
5GAD|1|A|G|1338
5GAD|1|A|G|1339
5GAD|1|A|U|1340
5GAD|1|A|G|1341
5GAD|1|A|A|1342
5GAD|1|A|G|1343
*
5GAD|1|A|C|1404
5GAD|1|A|U|1405
*
5GAD|1|A|A|1597
5GAD|1|A|A|1598
5GAD|1|A|U|1599
5GAD|1|A|C|1600
5GAD|1|A|G|1601
5GAD|1|A|U|1602
5GAD|1|A|A|1603
5GAD|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34