J4_5GAD_009

3D structure

PDB id

5GAD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP-SR complex early state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5GAD|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAD_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1049

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5GAD|1|A|C|1833
5GAD|1|A|U|1834
5GAD|1|A|G|1835
*
5GAD|1|A|C|1905
5GAD|1|A|G|1906
*
5GAD|1|A|C|1924
5GAD|1|A|C|1925
5GAD|1|A|U|1926
5GAD|1|A|A|1927
5GAD|1|A|A|1928
5GAD|1|A|G|1929
5GAD|1|A|G|1930
5GAD|1|A|U|1931
5GAD|1|A|A|1932
5GAD|1|A|G|1933
*
5GAD|1|A|C|1967
5GAD|1|A|G|1968
5GAD|1|A|A|1969
5GAD|1|A|A|1970
5GAD|1|A|U|1971
5GAD|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2