J4_5GAF_002

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAF_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0758

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAF|1|A|G|297
5GAF|1|A|G|298
5GAF|1|A|A|299
5GAF|1|A|A|300
5GAF|1|A|G|301
*
5GAF|1|A|C|316
5GAF|1|A|G|317
5GAF|1|A|C|318
5GAF|1|A|G|319
*
5GAF|1|A|C|323
5GAF|1|A|A|324
5GAF|1|A|G|325
*
5GAF|1|A|C|337
5GAF|1|A|G|338
5GAF|1|A|U|339
5GAF|1|A|A|340
5GAF|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24