J4_5GAF_009

3D structure

PDB id

5GAF (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5GAF|1|A|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAF_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1049

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5GAF|1|A|C|1833
5GAF|1|A|U|1834
5GAF|1|A|G|1835
*
5GAF|1|A|C|1905
5GAF|1|A|G|1906
*
5GAF|1|A|C|1924
5GAF|1|A|C|1925
5GAF|1|A|U|1926
5GAF|1|A|A|1927
5GAF|1|A|A|1928
5GAF|1|A|G|1929
5GAF|1|A|G|1930
5GAF|1|A|U|1931
5GAF|1|A|A|1932
5GAF|1|A|G|1933
*
5GAF|1|A|C|1967
5GAF|1|A|G|1968
5GAF|1|A|A|1969
5GAF|1|A|A|1970
5GAF|1|A|U|1971
5GAF|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2