J4_5GAG_002

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAG_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0849

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAG|1|A|G|297
5GAG|1|A|G|298
5GAG|1|A|A|299
5GAG|1|A|A|300
5GAG|1|A|G|301
*
5GAG|1|A|C|316
5GAG|1|A|G|317
5GAG|1|A|C|318
5GAG|1|A|G|319
*
5GAG|1|A|C|323
5GAG|1|A|A|324
5GAG|1|A|G|325
*
5GAG|1|A|C|337
5GAG|1|A|G|338
5GAG|1|A|U|339
5GAG|1|A|A|340
5GAG|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24