J4_5GAG_009

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5GAG|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAG_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1113

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5GAG|1|A|C|1833
5GAG|1|A|U|1834
5GAG|1|A|G|1835
*
5GAG|1|A|C|1905
5GAG|1|A|G|1906
*
5GAG|1|A|C|1924
5GAG|1|A|C|1925
5GAG|1|A|U|1926
5GAG|1|A|A|1927
5GAG|1|A|A|1928
5GAG|1|A|G|1929
5GAG|1|A|G|1930
5GAG|1|A|U|1931
5GAG|1|A|A|1932
5GAG|1|A|G|1933
*
5GAG|1|A|C|1967
5GAG|1|A|G|1968
5GAG|1|A|A|1969
5GAG|1|A|A|1970
5GAG|1|A|U|1971
5GAG|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2