J4_5GAH_002

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAH_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0758

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5GAH|1|A|G|297
5GAH|1|A|G|298
5GAH|1|A|A|299
5GAH|1|A|A|300
5GAH|1|A|G|301
*
5GAH|1|A|C|316
5GAH|1|A|G|317
5GAH|1|A|C|318
5GAH|1|A|G|319
*
5GAH|1|A|C|323
5GAH|1|A|A|324
5GAH|1|A|G|325
*
5GAH|1|A|C|337
5GAH|1|A|G|338
5GAH|1|A|U|339
5GAH|1|A|A|340
5GAH|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24