J4_5GAH_009

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5GAH|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAH_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1049

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5GAH|1|A|C|1833
5GAH|1|A|U|1834
5GAH|1|A|G|1835
*
5GAH|1|A|C|1905
5GAH|1|A|G|1906
*
5GAH|1|A|C|1924
5GAH|1|A|C|1925
5GAH|1|A|U|1926
5GAH|1|A|A|1927
5GAH|1|A|A|1928
5GAH|1|A|G|1929
5GAH|1|A|G|1930
5GAH|1|A|U|1931
5GAH|1|A|A|1932
5GAH|1|A|G|1933
*
5GAH|1|A|C|1967
5GAH|1|A|G|1968
5GAH|1|A|A|1969
5GAH|1|A|A|1970
5GAH|1|A|U|1971
5GAH|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2