J4_5H4P_006

3D structure

PDB id

5H4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H4P_006 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.078

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

5H4P|1|1|G|2130
5H4P|1|1|A|2131
5H4P|1|1|C|2132
5H4P|1|1|U|2133
5H4P|1|1|G|2134
*
5H4P|1|1|C|2146
5H4P|1|1|A|2147
5H4P|1|1|U|2148
5H4P|1|1|A|2149
5H4P|1|1|G|2150
*
5H4P|1|1|U|2186
5H4P|1|1|G|2187
5H4P|1|1|A|2188
5H4P|1|1|U|2189
5H4P|1|1|U|2190
*
5H4P|1|1|A|2317
5H4P|1|1|U|2318
5H4P|1|1|U|2319
5H4P|1|1|A|2320
5H4P|1|1|A|2321
5H4P|1|1|C|2322

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A