J4_5H5U_003

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_003 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.068

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5H5U|1|A|G|297
5H5U|1|A|G|298
5H5U|1|A|A|299
5H5U|1|A|A|300
5H5U|1|A|G|301
*
5H5U|1|A|C|316
5H5U|1|A|G|317
5H5U|1|A|C|318
5H5U|1|A|G|319
*
5H5U|1|A|C|323
5H5U|1|A|A|324
5H5U|1|A|G|325
*
5H5U|1|A|C|337
5H5U|1|A|G|338
5H5U|1|A|U|339
5H5U|1|A|A|340
5H5U|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24