J4_5H5U_006

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5H5U|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_006 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0534

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5H5U|1|A|G|1310
5H5U|1|A|G|1311
5H5U|1|A|U|1312
5H5U|1|A|U|1313
5H5U|1|A|C|1314
*
5H5U|1|A|G|1338
5H5U|1|A|G|1339
5H5U|1|A|U|1340
5H5U|1|A|G|1341
5H5U|1|A|A|1342
5H5U|1|A|G|1343
*
5H5U|1|A|C|1404
5H5U|1|A|U|1405
*
5H5U|1|A|A|1597
5H5U|1|A|A|1598
5H5U|1|A|U|1599
5H5U|1|A|C|1600
5H5U|1|A|G|1601
5H5U|1|A|U|1602
5H5U|1|A|A|1603
5H5U|1|A|C|1604

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34