J4_5HAU_002

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HAU_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0622

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|1A|C|320
5HAU|1|1A|G|321
5HAU|1|1A|A|322
5HAU|1|1A|A|323
5HAU|1|1A|G|324
*
5HAU|1|1A|C|339
5HAU|1|1A|G|340
5HAU|1|1A|C|341
5HAU|1|1A|C|342
*
5HAU|1|1A|G|346
5HAU|1|1A|A|347
5HAU|1|1A|G|348
*
5HAU|1|1A|C|360
5HAU|1|1A|G|361
5HAU|1|1A|U|362
5HAU|1|1A|A|363
5HAU|1|1A|G|364

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1W

50S ribosomal protein L24