3D structure

PDB id
5HAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
5HAU|1|1A|A|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5HAU_008 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0567
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5HAU|1|1A|U|1863
5HAU|1|1A|U|1864
5HAU|1|1A|G|1865
*
5HAU|1|1A|C|1926
5HAU|1|1A|G|1927
*
5HAU|1|1A|C|1945
5HAU|1|1A|C|1946
5HAU|1|1A|U|1947
5HAU|1|1A|A|1948
5HAU|1|1A|A|1949
5HAU|1|1A|G|1950
5HAU|1|1A|G|1951
5HAU|1|1A|U|1952
5HAU|1|1A|A|1953
5HAU|1|1A|G|1954
*
5HAU|1|1A|C|1988
5HAU|1|1A|G|1989
5HAU|1|1A|A|1990
5HAU|1|1A|A|1991
5HAU|1|1A|A|1992
5HAU|1|1A|A|1993

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2
Chain 1a
Small subunit ribosomal RNA; SSU rRNA
Chain 1w
Transfer RNA; tRNA

Coloring options:


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