J4_5HAU_017

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

5HAU|1|2A|G|1316, 5HAU|1|2A|A|1317, 5HAU|1|2A|U|1318, 5HAU|1|2A|A|1320, 5HAU|1|2A|G|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HAU_017 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0678

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5HAU|1|2A|C|1315
5HAU|1|2A|G|1316
5HAU|1|2A|A|1317
5HAU|1|2A|U|1318
5HAU|1|2A|A|1319
5HAU|1|2A|A|1320
5HAU|1|2A|A|1321
*
5HAU|1|2A|U|1339
5HAU|1|2A|C|1340
*
5HAU|1|2A|G|1691
5HAU|1|2A|C|1692
5HAU|1|2A|G|1693
5HAU|1|2A|C|1694
*
5HAU|1|2A|G|2030
5HAU|1|2A|G|2031

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L32

Chain 2P

50S ribosomal protein L17

Chain 2U

50S ribosomal protein L22