J4_5HCQ_002
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCQ_002 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0518
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5HCQ|1|1A|C|320
5HCQ|1|1A|G|321
5HCQ|1|1A|A|322
5HCQ|1|1A|A|323
5HCQ|1|1A|G|324
*
5HCQ|1|1A|C|339
5HCQ|1|1A|G|340
5HCQ|1|1A|C|341
5HCQ|1|1A|C|342
*
5HCQ|1|1A|G|346
5HCQ|1|1A|A|347
5HCQ|1|1A|G|348
*
5HCQ|1|1A|C|360
5HCQ|1|1A|G|361
5HCQ|1|1A|U|362
5HCQ|1|1A|A|363
5HCQ|1|1A|G|364
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
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