J4_5HCQ_012

3D structure

PDB id

5HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AAGAG*CAUGUG*CAAAG*CGCUU

Length

21 nucleotides

Bulged bases

5HCQ|1|1a|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5HCQ|1|1a|A|135
5HCQ|1|1a|A|136
5HCQ|1|1a|G|137
5HCQ|1|1a|A|138
5HCQ|1|1a|G|139
*
5HCQ|1|1a|C|173
5HCQ|1|1a|A|174
5HCQ|1|1a|U|175
5HCQ|1|1a|G|176
5HCQ|1|1a|U|177
5HCQ|1|1a|G|178
*
5HCQ|1|1a|C|201
5HCQ|1|1a|A|202
5HCQ|1|1a|A|203
5HCQ|1|1a|A|204
5HCQ|1|1a|G|205
*
5HCQ|1|1a|C|215
5HCQ|1|1a|G|216
5HCQ|1|1a|C|217
5HCQ|1|1a|U|218
5HCQ|1|1a|U|219

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20